Index

A

add_in_supervertex() (kale.prepdata.supergraph_construct.SuperVertex method) add_out_supervertex() (kale.prepdata.supergraph_construct.SuperVertex method)

apply_confidence_inversion() (in module kale.prepdata.tabular_transform) attention_pooling() (kale.embed.attention.BANLayer method) AVMNISTDataset (class in kale.loaddata.avmnist_datasets)

B

BANLayer (class in kale.embed.attention) BaseKernelDomainAdapter (class in kale.embed.factorization) BaseSELayer (class in kale.embed.video.selayer) BasicBlock (class in kale.embed.video.res3d) BasicFLowStem (class in kale.embed.video.res3d) BasicStem (class in kale.embed.video.res3d)

BasicTransform (class in kale.predict.isonet) BasicVideoDataset (class in kale.loaddata.video_datasets) bias_init() (in module kale.utils.initialize_nn) BimodalInteractionFusion (class in kale.embed.multimodal_fusion) Bottleneck (class in kale.embed.video.res3d) BottleneckTransform (class in kale.predict.isonet) build() (kale.embed.video.i3d.InceptionI3d method)

C

ClassNet (class in kale.predict.class_domain_nets) ClassNetSmallImage (class in kale.predict.class_domain_nets) ClassNetVideo (class in kale.predict.class_domain_nets) ClassNetVideoConv (class in kale.predict.class_domain_nets) CNNEncoder (class in kale.embed.cnn) CNNTransformer (class in kale.embed.cnn) compute_pad() (kale.embed.video.i3d.MaxPool3dSamePadding method) (kale.embed.video.i3d.Unit3D method)

Concat (class in kale.embed.multimodal_fusion) construct_logger() (in module kale.utils.logger) ContextCNNGeneric (class in kale.embed.cnn) Conv2Plus1D (class in kale.embed.video.res3d) Conv3DNoTemporal (class in kale.embed.video.res3d) Conv3DSimple (class in kale.embed.video.res3d) convert_to_float() (in module kale.prepdata.string_transform) cross_validate() (in module kale.evaluate.cross_validation)

D

DatasetAccess (class in kale.loaddata.dataset_access) decision_function() (kale.pipeline.mpca_trainer.MPCATrainer method) DomainNetSmallImage (class in kale.predict.class_domain_nets)

DomainNetVideo (class in kale.predict.class_domain_nets) download() (kale.loaddata.mnistm.MNISTM method) (kale.loaddata.usps.USPS method) DTIDataset (class in kale.loaddata.molecular_datasets)

E

EPIC (class in kale.loaddata.video_datasets) expansion (kale.embed.video.res3d.BasicBlock attribute) (kale.embed.video.res3d.Bottleneck attribute)

extra_repr() (kale.predict.class_domain_nets.SoftmaxNet method) extract_features() (kale.embed.video.i3d.InceptionI3d method)

F

FCNet (class in kale.embed.nn) fit() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MPCA method) (kale.pipeline.mpca_trainer.MPCATrainer method) fit_transform() (kale.embed.factorization.BaseKernelDomainAdapter method) forward() (kale.embed.attention.BANLayer method) (kale.embed.attention.PositionalEncoding method) (kale.embed.cnn.CNNEncoder method) (kale.embed.cnn.ContextCNNGeneric method) (kale.embed.cnn.ProteinCNN method) (kale.embed.gcn.GCNEncoder method) (kale.embed.gcn.GCNEncoderLayer method) (kale.embed.gcn.MolecularGCN method) (kale.embed.gcn.RGCNEncoderLayer method) (kale.embed.model_lib.gripnet.GripNet method) (kale.embed.model_lib.gripnet.GripNetExternalModule method) (kale.embed.model_lib.gripnet.GripNetInternalModule method) (kale.embed.model_lib.mogonet.MogonetGCN method) (kale.embed.model_lib.mogonet.MogonetGCNConv method) (kale.embed.multimodal_fusion.BimodalInteractionFusion method) (kale.embed.multimodal_fusion.Concat method) (kale.embed.multimodal_fusion.LowRankTensorFusion method) (kale.embed.multimodal_fusion.ProductOfExperts method) (kale.embed.nn.FCNet method) (kale.embed.nn.RandomLayer method) (kale.embed.signal_cnn.SignalVAEEncoder method) (kale.embed.video.i3d.InceptionI3d method) (kale.embed.video.i3d.InceptionModule method) (kale.embed.video.i3d.MaxPool3dSamePadding method) (kale.embed.video.i3d.Unit3D method) (kale.embed.video.res3d.BasicBlock method) (kale.embed.video.res3d.Bottleneck method) (kale.embed.video.res3d.VideoResNet method) (kale.embed.video.se_i3d.SEInceptionI3DFlow method) (kale.embed.video.se_i3d.SEInceptionI3DRGB method) (kale.embed.video.selayer.BaseSELayer method) (kale.embed.video.selayer.SELayerCT method) (kale.embed.video.selayer.SELayerTC method) (kale.predict.class_domain_nets.ClassNet method) (kale.predict.class_domain_nets.ClassNetSmallImage method) (kale.predict.class_domain_nets.ClassNetVideo method) (kale.predict.class_domain_nets.ClassNetVideoConv method) (kale.predict.class_domain_nets.DomainNetSmallImage method) (kale.predict.class_domain_nets.DomainNetVideo method) (kale.predict.class_domain_nets.SoftmaxNet method) (kale.predict.isonet.BasicTransform method) (kale.predict.isonet.BottleneckTransform method) (kale.predict.isonet.ISONet method) (kale.predict.isonet.ResBlock method) (kale.predict.isonet.ResHead method) (kale.predict.isonet.ResStage method) (kale.predict.isonet.ResStem method) (kale.predict.isonet.SReLU method)

G

GCNEncoder (class in kale.embed.gcn) GCNEncoderLayer (class in kale.embed.gcn) generate_struct_for_qbin() (in module kale.prepdata.tabular_transform) generate_summary_df() (in module kale.utils.save_xlsx) get_class_subset() (in module kale.loaddata.dataset_access) get_downsample_stride() (kale.embed.video.res3d.Conv2Plus1D static method) (kale.embed.video.res3d.Conv3DNoTemporal static method) (kale.embed.video.res3d.Conv3DSimple static method) get_selayer() (in module kale.embed.video.selayer) get_test() (kale.loaddata.dataset_access.DatasetAccess method)

get_test_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) get_train() (kale.loaddata.dataset_access.DatasetAccess method) get_train_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) get_train_valid() (kale.loaddata.dataset_access.DatasetAccess method) get_trans_fun() (in module kale.predict.isonet) get_valid_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) graph_collate_func() (in module kale.loaddata.molecular_datasets) GripNet (class in kale.embed.model_lib.gripnet) GripNetExternalModule (class in kale.embed.model_lib.gripnet) GripNetInternalModule (class in kale.embed.model_lib.gripnet)

I

i3d() (in module kale.embed.video.i3d) i3d_joint() (in module kale.embed.video.i3d) idx_order (kale.embed.factorization.MPCA attribute) InceptionI3d (class in kale.embed.video.i3d) InceptionModule (class in kale.embed.video.i3d)

integer_label_protein() (in module kale.prepdata.chem_transform) integer_label_smiles() (in module kale.prepdata.chem_transform) interpolate_signal() (in module kale.prepdata.signal_transform) inverse_transform() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MPCA method) ISONet (class in kale.predict.isonet)

K

kale.embed module kale.embed.attention module kale.embed.cnn module kale.embed.factorization module kale.embed.gcn module kale.embed.model_lib.gripnet module kale.embed.model_lib.mogonet module kale.embed.multimodal_fusion module kale.embed.nn module kale.embed.signal_cnn module kale.embed.video.i3d module kale.embed.video.res3d module kale.embed.video.se_i3d module kale.embed.video.se_res3d module kale.embed.video.selayer module kale.evaluate module kale.evaluate.cross_validation module kale.interpret module kale.loaddata module kale.loaddata.avmnist_datasets module kale.loaddata.dataset_access module kale.loaddata.few_shot module kale.loaddata.mnistm module kale.loaddata.molecular_datasets module kale.loaddata.signal_access module kale.loaddata.signal_image_access module

kale.loaddata.tabular_access module kale.loaddata.usps module kale.loaddata.video_datasets module kale.loaddata.videos module kale.pipeline module kale.pipeline.mpca_trainer module kale.predict module kale.predict.class_domain_nets module kale.predict.isonet module kale.predict.uncertainty_binning module kale.prepdata module kale.prepdata.chem_transform module kale.prepdata.graph_negative_sampling module kale.prepdata.signal_transform module kale.prepdata.string_transform module kale.prepdata.supergraph_construct module kale.prepdata.tabular_transform module kale.prepdata.tensor_reshape module kale.utils module kale.utils.initialize_nn module kale.utils.logger module kale.utils.print module kale.utils.remap_model_parameters module kale.utils.save_xlsx module kale.utils.seed module

L

leave_one_group_out() (in module kale.evaluate.cross_validation) load_csv_columns() (in module kale.loaddata.tabular_access) load_data() (kale.loaddata.avmnist_datasets.AVMNISTDataset method)

load_ecg_from_folder() (in module kale.loaddata.signal_access) load_samples() (kale.loaddata.usps.USPS method) LowRankTensorFusion (class in kale.embed.multimodal_fusion)

M

make_dataset() (kale.loaddata.video_datasets.BasicVideoDataset method) (kale.loaddata.video_datasets.EPIC method) MaxPool3dSamePadding (class in kale.embed.video.i3d) mc3() (in module kale.embed.video.res3d) mc3_18_flow() (in module kale.embed.video.res3d) mc3_18_rgb() (in module kale.embed.video.res3d) mean_ (kale.embed.factorization.MPCA attribute) message() (kale.embed.model_lib.mogonet.MogonetGCNConv method) message_and_aggregate() (kale.embed.model_lib.mogonet.MogonetGCNConv method) MIDA (class in kale.embed.factorization) MNISTM (class in kale.loaddata.mnistm) module kale.embed kale.embed.attention kale.embed.cnn kale.embed.factorization kale.embed.gcn kale.embed.model_lib.gripnet kale.embed.model_lib.mogonet kale.embed.multimodal_fusion kale.embed.nn kale.embed.signal_cnn kale.embed.video.i3d kale.embed.video.res3d kale.embed.video.se_i3d kale.embed.video.se_res3d kale.embed.video.selayer kale.evaluate kale.evaluate.cross_validation kale.interpret kale.loaddata kale.loaddata.avmnist_datasets kale.loaddata.dataset_access kale.loaddata.few_shot kale.loaddata.mnistm kale.loaddata.molecular_datasets kale.loaddata.signal_access kale.loaddata.signal_image_access kale.loaddata.tabular_access kale.loaddata.usps kale.loaddata.video_datasets kale.loaddata.videos kale.pipeline kale.pipeline.mpca_trainer kale.predict kale.predict.class_domain_nets kale.predict.isonet kale.predict.uncertainty_binning kale.prepdata kale.prepdata.chem_transform kale.prepdata.graph_negative_sampling kale.prepdata.signal_transform kale.prepdata.string_transform kale.prepdata.supergraph_construct kale.prepdata.tabular_transform kale.prepdata.tensor_reshape kale.utils kale.utils.initialize_nn kale.utils.logger kale.utils.print kale.utils.remap_model_parameters kale.utils.save_xlsx kale.utils.seed

MogonetGCN (class in kale.embed.model_lib.mogonet) MogonetGCNConv (class in kale.embed.model_lib.mogonet) MolecularGCN (class in kale.embed.gcn) MPCA (class in kale.embed.factorization) MPCATrainer (class in kale.pipeline.mpca_trainer)

N

n_classes() (kale.loaddata.dataset_access.DatasetAccess method) (kale.predict.class_domain_nets.ClassNetSmallImage method) (kale.predict.class_domain_nets.ClassNetVideo method) (kale.predict.class_domain_nets.SoftmaxNet method)

negative_sampling() (in module kale.prepdata.graph_negative_sampling) norm() (kale.embed.gcn.GCNEncoderLayer static method) normalize_signal() (in module kale.prepdata.signal_transform) normalize_tensor() (in module kale.prepdata.tensor_reshape) NWayKShotDataset (class in kale.loaddata.few_shot)

O

orig_coef_ (kale.embed.factorization.BaseKernelDomainAdapter property) ortho() (kale.predict.isonet.ISONet method) ortho_conv() (kale.predict.isonet.ISONet method)

out_file_core() (in module kale.utils.logger) output_size() (kale.embed.cnn.CNNEncoder method) (kale.embed.cnn.ProteinCNN method) (kale.embed.signal_cnn.SignalVAEEncoder method)

P

PositionalEncoding (class in kale.embed.attention) pprint() (in module kale.utils.print) pprint_without_newline() (in module kale.utils.print) predict() (kale.pipeline.mpca_trainer.MPCATrainer method) predict_proba() (kale.pipeline.mpca_trainer.MPCATrainer method)

prepare_data_loaders() (kale.loaddata.signal_image_access.SignalImageDataset class method) prepare_ecg_tensor() (in module kale.prepdata.signal_transform) processed_folder (kale.loaddata.mnistm.MNISTM attribute) ProductOfExperts (class in kale.embed.multimodal_fusion) proj_mats (kale.embed.factorization.MPCA attribute) ProteinCNN (class in kale.embed.cnn)

Q

quantile_binning_predictions() (in module kale.predict.uncertainty_binning)

R

r2plus1d() (in module kale.embed.video.res3d) r2plus1d_18_flow() (in module kale.embed.video.res3d) r2plus1d_18_rgb() (in module kale.embed.video.res3d) R2Plus1dFlowStem (class in kale.embed.video.res3d) R2Plus1dStem (class in kale.embed.video.res3d) r3d() (in module kale.embed.video.res3d) r3d_18_flow() (in module kale.embed.video.res3d) r3d_18_rgb() (in module kale.embed.video.res3d) RandomLayer (class in kale.embed.nn) raw_folder (kale.loaddata.mnistm.MNISTM attribute)

remap_state_dict_keys() (in module kale.utils.remap_model_parameters) replace_fc() (kale.embed.video.res3d.VideoResNet method) replace_logits() (kale.embed.video.i3d.InceptionI3d method) ResBlock (class in kale.predict.isonet) reset_parameters() (kale.embed.gcn.GCNEncoderLayer method) (kale.embed.gcn.RGCNEncoderLayer method) (kale.embed.model_lib.mogonet.MogonetGCNConv method) ResHead (class in kale.predict.isonet) ResStage (class in kale.predict.isonet) ResStem (class in kale.predict.isonet) RGCNEncoderLayer (class in kale.embed.gcn)

S

save_dict_xlsx() (in module kale.utils.save_xlsx) se_i3d_joint() (in module kale.embed.video.se_i3d) se_inception_i3d() (in module kale.embed.video.se_i3d) se_mc3() (in module kale.embed.video.se_res3d) se_mc3_18_flow() (in module kale.embed.video.se_res3d) se_mc3_18_rgb() (in module kale.embed.video.se_res3d) se_r2plus1d() (in module kale.embed.video.se_res3d) se_r2plus1d_18_flow() (in module kale.embed.video.se_res3d) se_r2plus1d_18_rgb() (in module kale.embed.video.se_res3d) se_r3d() (in module kale.embed.video.se_res3d) se_r3d_18_flow() (in module kale.embed.video.se_res3d) se_r3d_18_rgb() (in module kale.embed.video.se_res3d) SEInceptionI3DFlow (class in kale.embed.video.se_i3d) SEInceptionI3DRGB (class in kale.embed.video.se_i3d) SELayerC (class in kale.embed.video.selayer) SELayerCT (class in kale.embed.video.selayer) SELayerMAC (class in kale.embed.video.selayer) SELayerMC (class in kale.embed.video.selayer) SELayerMixin (class in kale.embed.video.res3d) SELayerT (class in kale.embed.video.selayer) SELayerTC (class in kale.embed.video.selayer) seq_to_spatial() (in module kale.prepdata.tensor_reshape) set_decision_function_request() (kale.pipeline.mpca_trainer.MPCATrainer method) set_fit_request() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) (kale.pipeline.mpca_trainer.MPCATrainer method)

set_inverse_transform_request() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) set_predict_proba_request() (kale.pipeline.mpca_trainer.MPCATrainer method) set_predict_request() (kale.pipeline.mpca_trainer.MPCATrainer method) set_score_request() (kale.pipeline.mpca_trainer.MPCATrainer method) set_seed() (in module kale.utils.seed) set_supergraph_para_setting() (kale.prepdata.supergraph_construct.SuperGraph method) set_transform_request() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) shape_in (kale.embed.factorization.MPCA attribute) shape_out (kale.embed.factorization.MPCA attribute) SignalImageDataset (class in kale.loaddata.signal_image_access) SignalVAEEncoder (class in kale.embed.signal_cnn) smiles_to_graph() (in module kale.loaddata.molecular_datasets) SoftmaxNet (class in kale.predict.class_domain_nets) spatial_to_seq() (in module kale.prepdata.tensor_reshape) split_by_ratios() (in module kale.loaddata.dataset_access) SReLU (class in kale.predict.isonet) strip_for_bound() (in module kale.prepdata.string_transform) SuperEdge (class in kale.prepdata.supergraph_construct) SuperGraph (class in kale.prepdata.supergraph_construct) SuperVertex (class in kale.prepdata.supergraph_construct) SuperVertexParaSetting (class in kale.prepdata.supergraph_construct)

T

test_file (kale.loaddata.mnistm.MNISTM attribute) ToOneHotEncoding (class in kale.prepdata.tabular_transform) ToTensor (class in kale.prepdata.tabular_transform) tprint() (in module kale.utils.print)

training_file (kale.loaddata.mnistm.MNISTM attribute) transform() (kale.embed.factorization.BaseKernelDomainAdapter method) (kale.embed.factorization.MPCA method) typed_negative_sampling() (in module kale.prepdata.graph_negative_sampling)

U

Unit3D (class in kale.embed.video.i3d) update() (kale.embed.model_lib.mogonet.MogonetGCNConv method)

url (kale.loaddata.mnistm.MNISTM attribute) (kale.loaddata.usps.USPS attribute) USPS (class in kale.loaddata.usps)

V

VALID_ENDPOINTS (kale.embed.video.i3d.InceptionI3d attribute)

VideoFrameDataset (class in kale.loaddata.videos) VideoResNet (class in kale.embed.video.res3d)

X

xavier_init() (in module kale.utils.initialize_nn)