Index

A

activations (kale.embed.image_cnn.SimpleCNNBuilder attribute) add_in_supervertex() (kale.prepdata.supergraph_construct.SuperVertex method) add_out_supervertex() (kale.prepdata.supergraph_construct.SuperVertex method) ADL (kale.loaddata.video_access.VideoDataset attribute)

ADLDatasetAccess (class in kale.loaddata.video_access) allow_supervised() (kale.pipeline.domain_adapter.Method method) apply_confidence_inversion() (in module kale.prepdata.tabular_transform) auprc_auroc_ap() (in module kale.evaluate.metrics) AVMNISTDataset (class in kale.loaddata.avmnist_datasets)

B

backward() (kale.pipeline.domain_adapter.GradReverse static method) BALANCED (kale.loaddata.multi_domain.WeightingType attribute) BalancedBatchSampler (class in kale.loaddata.sampler) BaseAdaptTrainer (class in kale.pipeline.domain_adapter) BaseDANNLike (class in kale.pipeline.domain_adapter) BaseDTATrainer (class in kale.pipeline.deepdta) BaseMMDLike (class in kale.pipeline.domain_adapter) BaseMMDLikeVideo (class in kale.pipeline.video_domain_adapter) BaseMultiSourceTrainer (class in kale.pipeline.multi_domain_adapter) BaseNNTrainer (class in kale.pipeline.base_nn_trainer) BasicBlock (class in kale.embed.video_res3d) BasicFLowStem (class in kale.embed.video_res3d) BasicStem (class in kale.embed.video_res3d)

BasicTransform (class in kale.predict.isonet) BasicVideoDataset (class in kale.loaddata.video_datasets) bias_init() (in module kale.utils.initialize_nn) BimodalInteractionFusion (class in kale.embed.feature_fusion) bin_wise_bound_eval() (in module kale.evaluate.uncertainty_metrics) bin_wise_errors() (in module kale.evaluate.uncertainty_metrics) bin_wise_jaccard() (in module kale.evaluate.uncertainty_metrics) BindingDBDataset (class in kale.loaddata.tdc_datasets) Bottleneck (class in kale.embed.video_res3d) BottleneckTransform (class in kale.predict.isonet) box_plot_comparing_q() (in module kale.interpret.uncertainty_quantiles) box_plot_per_model() (in module kale.interpret.uncertainty_quantiles) build() (kale.embed.video_i3d.InceptionI3d method)

C

calculate_distance() (in module kale.utils.distance) CDAN (kale.pipeline.domain_adapter.Method attribute) CDAN_E (kale.pipeline.domain_adapter.Method attribute) CDANTrainer (class in kale.pipeline.domain_adapter) CDANTrainerVideo (class in kale.pipeline.video_domain_adapter) check_dicom_series_uid() (in module kale.loaddata.image_access) ClassNet (class in kale.predict.class_domain_nets) ClassNetSmallImage (class in kale.predict.class_domain_nets) ClassNetVideo (class in kale.predict.class_domain_nets) ClassNetVideoConv (class in kale.predict.class_domain_nets) cls_discrepancy() (kale.pipeline.multi_domain_adapter.MFSANTrainer method) CNNEncoder (class in kale.embed.seq_nn) CNNTransformer (class in kale.embed.attention_cnn) CNNTransformerTrainer (class in kale.pipeline.base_nn_trainer) CoIRLS (class in kale.pipeline.multi_domain_adapter) compute_loss() (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.CNNTransformerTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.domain_adapter.BaseDANNLike method) (kale.pipeline.domain_adapter.BaseMMDLike method) (kale.pipeline.domain_adapter.CDANTrainer method) (kale.pipeline.domain_adapter.FewShotDANNTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainer method) (kale.pipeline.multi_domain_adapter.BaseMultiSourceTrainer method) (kale.pipeline.multi_domain_adapter.M3SDATrainer method) (kale.pipeline.multi_domain_adapter.MFSANTrainer method) (kale.pipeline.video_domain_adapter.BaseMMDLikeVideo method) (kale.pipeline.video_domain_adapter.CDANTrainerVideo method) (kale.pipeline.video_domain_adapter.DANNTrainerVideo method) (kale.pipeline.video_domain_adapter.WDGRLTrainerVideo method) compute_mmd_loss() (in module kale.predict.losses)

compute_pad() (kale.embed.video_i3d.MaxPool3dSamePadding method) (kale.embed.video_i3d.Unit3D method) Concat (class in kale.embed.feature_fusion) ConcatMultiDomainAccess (class in kale.loaddata.multi_domain) concord_index() (in module kale.evaluate.metrics) configure_optimizers() (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.CNNTransformerTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.deepdta.BaseDTATrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainerMod method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) (kale.pipeline.video_domain_adapter.WDGRLTrainerVideo method) (kale.predict.decode.GripNetLinkPrediction method) construct_logger() (in module kale.utils.logger) ContextCNNGeneric (class in kale.embed.attention_cnn) Conv2Plus1D (class in kale.embed.video_res3d) Conv3DNoTemporal (class in kale.embed.video_res3d) Conv3DSimple (class in kale.embed.video_res3d) COSINE (kale.utils.distance.DistanceMetric attribute) create_dann_like() (in module kale.pipeline.domain_adapter) create_dann_like_video() (in module kale.pipeline.video_domain_adapter) create_fewshot_trainer() (in module kale.pipeline.domain_adapter) create_loader() (kale.loaddata.sampler.FixedSeedSamplingConfig method) (kale.loaddata.sampler.SamplingConfig method) create_mmd_based() (in module kale.pipeline.domain_adapter) create_mmd_based_video() (in module kale.pipeline.video_domain_adapter) create_ms_adapt_trainer() (in module kale.pipeline.multi_domain_adapter) critic_update_steps() (kale.pipeline.domain_adapter.WDGRLTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainerMod method) (kale.pipeline.video_domain_adapter.WDGRLTrainerVideo method) cross_entropy_logits() (in module kale.predict.losses)

D

DAN (kale.pipeline.domain_adapter.Method attribute) DANN (kale.pipeline.domain_adapter.Method attribute) DANNTrainer (class in kale.pipeline.domain_adapter) DANNTrainerVideo (class in kale.pipeline.video_domain_adapter) DANTrainer (class in kale.pipeline.domain_adapter) DANTrainerVideo (class in kale.pipeline.video_domain_adapter) DatasetAccess (class in kale.loaddata.dataset_access) DatasetSizeType (class in kale.loaddata.multi_domain) decision_function() (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method) DeepDTATrainer (class in kale.pipeline.deepdta) dicom2arraylist() (in module kale.loaddata.image_access) DigitDataset (class in kale.loaddata.image_access)

DigitDatasetAccess (class in kale.loaddata.image_access) DistanceMetric (class in kale.utils.distance) DistMultDecoder (class in kale.predict.decode) distplot_1d() (in module kale.interpret.visualize) DomainBalancedBatchSampler (class in kale.loaddata.sampler) DomainNetSmallImage (class in kale.predict.class_domain_nets) DomainNetVideo (class in kale.predict.class_domain_nets) DomainsDatasetBase (class in kale.loaddata.multi_domain) download() (kale.loaddata.image_access.OfficeAccess static method) (kale.loaddata.mnistm.MNISTM method) (kale.loaddata.multiomics_datasets.MultiomicsDataset method) (kale.loaddata.usps.USPS method) download_file_by_url() (in module kale.utils.download) download_file_gdrive() (in module kale.utils.download)

E

entropy_logits() (in module kale.predict.losses) entropy_logits_loss() (in module kale.predict.losses) EPIC (class in kale.loaddata.video_datasets) (kale.loaddata.video_access.VideoDataset attribute) EPICDatasetAccess (class in kale.loaddata.video_access) euclidean() (in module kale.predict.losses) evaluate_bounds() (in module kale.evaluate.uncertainty_metrics)

evaluate_correlations() (in module kale.evaluate.similarity_metrics) evaluate_jaccard() (in module kale.evaluate.uncertainty_metrics) expansion (kale.embed.video_res3d.BasicBlock attribute) (kale.embed.video_res3d.Bottleneck attribute) extend_data() (kale.loaddata.multiomics_datasets.MultiomicsDataset method) (kale.loaddata.multiomics_datasets.SparseMultiomicsDataset method) extra_repr() (kale.predict.class_domain_nets.SoftmaxNet method) extract_features() (kale.embed.video_i3d.InceptionI3d method)

F

FewShotDANNTrainer (class in kale.pipeline.domain_adapter) fit() (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method) fit_and_predict() (in module kale.embed.uncertainty_fitting) fit_line_with_ci() (in module kale.interpret.uncertainty_quantiles) fit_transform() (kale.embed.factorization.MIDA method) FixedSeedSamplingConfig (class in kale.loaddata.sampler) Flatten (class in kale.embed.image_cnn) format_plot() (in module kale.interpret.uncertainty_quantiles) forward() (kale.embed.attention_cnn.ContextCNNGeneric method) (kale.embed.feature_fusion.BimodalInteractionFusion method) (kale.embed.feature_fusion.Concat method) (kale.embed.feature_fusion.LowRankTensorFusion method) (kale.embed.gcn.GCNEncoderLayer method) (kale.embed.gcn.RGCNEncoderLayer method) (kale.embed.gripnet.GripNet method) (kale.embed.gripnet.GripNetExternalModule method) (kale.embed.gripnet.GripNetInternalModule method) (kale.embed.image_cnn.Flatten method) (kale.embed.image_cnn.Identity method) (kale.embed.image_cnn.LeNet method) (kale.embed.image_cnn.ResNet101Feature method) (kale.embed.image_cnn.ResNet152Feature method) (kale.embed.image_cnn.ResNet18Feature method) (kale.embed.image_cnn.ResNet34Feature method) (kale.embed.image_cnn.ResNet50Feature method) (kale.embed.image_cnn.SimpleCNNBuilder method) (kale.embed.image_cnn.SmallCNNFeature method) (kale.embed.mogonet.MogonetGCN method) (kale.embed.mogonet.MogonetGCNConv method) (kale.embed.positional_encoding.PositionalEncoding method) (kale.embed.seq_nn.CNNEncoder method) (kale.embed.seq_nn.GCNEncoder method) (kale.embed.video_i3d.InceptionI3d method) (kale.embed.video_i3d.InceptionModule method) (kale.embed.video_i3d.MaxPool3dSamePadding method) (kale.embed.video_i3d.Unit3D method) (kale.embed.video_res3d.BasicBlock method) (kale.embed.video_res3d.Bottleneck method) (kale.embed.video_res3d.VideoResNet method) (kale.embed.video_se_i3d.SEInceptionI3DFlow method) (kale.embed.video_se_i3d.SEInceptionI3DRGB method) (kale.embed.video_selayer.SELayer method) (kale.embed.video_selayer.SELayerC method) (kale.embed.video_selayer.SELayerCoC method) (kale.embed.video_selayer.SELayerMAC method) (kale.embed.video_selayer.SELayerMC method) (kale.embed.video_selayer.SELayerT method) (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.CNNTransformerTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.deepdta.BaseDTATrainer method) (kale.pipeline.deepdta.DeepDTATrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.domain_adapter.BaseMMDLike method) (kale.pipeline.domain_adapter.CDANTrainer method) (kale.pipeline.domain_adapter.DANNTrainer method) (kale.pipeline.domain_adapter.FewShotDANNTrainer method) (kale.pipeline.domain_adapter.GradReverse static method) (kale.pipeline.domain_adapter.WDGRLTrainer method) (kale.pipeline.multi_domain_adapter.BaseMultiSourceTrainer method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) (kale.pipeline.video_domain_adapter.BaseMMDLikeVideo method) (kale.pipeline.video_domain_adapter.CDANTrainerVideo method) (kale.pipeline.video_domain_adapter.DANNTrainerVideo method) (kale.pipeline.video_domain_adapter.WDGRLTrainerVideo method) (kale.predict.class_domain_nets.ClassNet method) (kale.predict.class_domain_nets.ClassNetSmallImage method) (kale.predict.class_domain_nets.ClassNetVideo method) (kale.predict.class_domain_nets.ClassNetVideoConv method) (kale.predict.class_domain_nets.DomainNetSmallImage method) (kale.predict.class_domain_nets.DomainNetVideo method) (kale.predict.class_domain_nets.SoftmaxNet method) (kale.predict.decode.DistMultDecoder method) (kale.predict.decode.GripNetLinkPrediction method) (kale.predict.decode.LinearClassifier method) (kale.predict.decode.MLPDecoder method) (kale.predict.decode.VCDN method) (kale.predict.isonet.BasicTransform method) (kale.predict.isonet.BottleneckTransform method) (kale.predict.isonet.ISONet method) (kale.predict.isonet.ResBlock method) (kale.predict.isonet.ResHead method) (kale.predict.isonet.ResStage method) (kale.predict.isonet.ResStem method) (kale.predict.isonet.SReLU method) (kale.prepdata.video_transform.ImglistToTensor method)

FSDANN (kale.pipeline.domain_adapter.Method attribute)

G

gaussian_kernel() (in module kale.predict.losses) GCNEncoder (class in kale.embed.seq_nn) GCNEncoderLayer (class in kale.embed.gcn) generate_fig_comparing_bins() (in module kale.interpret.uncertainty_quantiles) generate_fig_individual_bin_comparison() (in module kale.interpret.uncertainty_quantiles) generate_list() (in module kale.loaddata.video_access) generate_struct_for_qbin() (in module kale.prepdata.tabular_transform) generate_summary_df() (in module kale.utils.save_xlsx) generic_box_plot_loop() (in module kale.interpret.uncertainty_quantiles) get() (kale.loaddata.multiomics_datasets.MultiomicsDataset method) (kale.loaddata.sampler.InfiniteSliceIterator method) get_access() (kale.loaddata.image_access.DigitDataset static method) get_adjacency_info() (kale.loaddata.multiomics_datasets.MultiomicsDataset static method) get_channel_numbers() (kale.loaddata.image_access.DigitDataset static method) get_cifar() (in module kale.loaddata.image_access) get_class_subset() (in module kale.loaddata.dataset_access) get_digit_transform() (kale.loaddata.image_access.DigitDataset static method) get_domain_loaders() (kale.loaddata.multi_domain.DomainsDatasetBase method) (kale.loaddata.multi_domain.MultiDomainAdapDataset method) (kale.loaddata.multi_domain.MultiDomainDatasets method) (kale.loaddata.video_multi_domain.VideoMultiDomainDatasets method) get_downsample_stride() (kale.embed.video_res3d.Conv2Plus1D static method) (kale.embed.video_res3d.Conv3DNoTemporal static method) (kale.embed.video_res3d.Conv3DSimple static method) get_image_modality() (in module kale.loaddata.video_access) get_labels() (in module kale.loaddata.sampler) get_mean_errors() (in module kale.evaluate.uncertainty_metrics) get_multi_domain_images() (kale.loaddata.image_access.ImageAccess static method) get_random_split() (kale.loaddata.multiomics_datasets.MultiomicsDataset static method) get_selayer() (in module kale.embed.video_selayer) get_size() (kale.loaddata.multi_domain.DatasetSizeType static method) get_source_target() (kale.loaddata.image_access.DigitDataset static method) (kale.loaddata.video_access.VideoDataset static method) get_test() (kale.loaddata.dataset_access.DatasetAccess method) (kale.loaddata.image_access.MNISTDatasetAccess method) (kale.loaddata.image_access.MNISTMDatasetAccess method) (kale.loaddata.image_access.SVHNDatasetAccess method) (kale.loaddata.image_access.USPSDatasetAccess method) (kale.loaddata.multi_domain.MultiDomainAccess method) (kale.loaddata.multi_domain.MultiDomainImageFolder method) (kale.loaddata.video_access.ADLDatasetAccess method) (kale.loaddata.video_access.EPICDatasetAccess method) (kale.loaddata.video_access.GTEADatasetAccess method) (kale.loaddata.video_access.KITCHENDatasetAccess method)

get_test_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) get_train() (kale.loaddata.dataset_access.DatasetAccess method) (kale.loaddata.image_access.MNISTDatasetAccess method) (kale.loaddata.image_access.MNISTMDatasetAccess method) (kale.loaddata.image_access.SVHNDatasetAccess method) (kale.loaddata.image_access.USPSDatasetAccess method) (kale.loaddata.multi_domain.MultiDomainAccess method) (kale.loaddata.multi_domain.MultiDomainImageFolder method) (kale.loaddata.video_access.ADLDatasetAccess method) (kale.loaddata.video_access.EPICDatasetAccess method) (kale.loaddata.video_access.GTEADatasetAccess method) (kale.loaddata.video_access.KITCHENDatasetAccess method) get_train_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) get_train_valid() (kale.loaddata.dataset_access.DatasetAccess method) (kale.loaddata.video_access.VideoDatasetAccess method) get_trans_fun() (in module kale.predict.isonet) get_transform() (in module kale.prepdata.image_transform) (in module kale.prepdata.video_transform) get_valid_loader() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) get_video_feat_extractor() (in module kale.embed.video_feature_extractor) get_videodata_config() (in module kale.loaddata.video_access) gradient_penalty() (in module kale.predict.losses) GradReverse (class in kale.pipeline.domain_adapter) GripNet (class in kale.embed.gripnet) GripNetExternalModule (class in kale.embed.gripnet) GripNetInternalModule (class in kale.embed.gripnet) GripNetLinkPrediction (class in kale.predict.decode) GTEA (kale.loaddata.video_access.VideoDataset attribute) GTEADatasetAccess (class in kale.loaddata.video_access)

H

hsic() (in module kale.predict.losses)

I

i3d() (in module kale.embed.video_i3d) i3d_joint() (in module kale.embed.video_i3d) Identity (class in kale.embed.image_cnn) idx_order (kale.embed.factorization.MPCA attribute) ImageAccess (class in kale.loaddata.image_access) ImglistToTensor (class in kale.prepdata.video_transform) InceptionI3d (class in kale.embed.video_i3d) InceptionModule (class in kale.embed.video_i3d) InfiniteSliceIterator (class in kale.loaddata.sampler)

integer_label_protein() (in module kale.prepdata.chem_transform) integer_label_smiles() (in module kale.prepdata.chem_transform) inverse_transform() (kale.embed.factorization.MPCA method) is_cdan_method() (kale.pipeline.domain_adapter.Method method) is_dann_method() (kale.pipeline.domain_adapter.Method method) is_fewshot_method() (kale.pipeline.domain_adapter.Method method) is_mmd_method() (kale.pipeline.domain_adapter.Method method) is_semi_supervised() (kale.loaddata.multi_domain.MultiDomainDatasets method) ISONet (class in kale.predict.isonet)

J

jaccard_similarity() (in module kale.evaluate.similarity_metrics) JAN (kale.pipeline.domain_adapter.Method attribute)

JANTrainer (class in kale.pipeline.domain_adapter) JANTrainerVideo (class in kale.pipeline.video_domain_adapter)

K

kale.embed module kale.embed.attention_cnn module kale.embed.factorization module kale.embed.feature_fusion module kale.embed.gcn module kale.embed.gripnet module kale.embed.image_cnn module kale.embed.mogonet module kale.embed.positional_encoding module kale.embed.seq_nn module kale.embed.uncertainty_fitting module kale.embed.video_feature_extractor module kale.embed.video_i3d module kale.embed.video_res3d module kale.embed.video_se_i3d module kale.embed.video_se_res3d module kale.embed.video_selayer module kale.evaluate module kale.evaluate.cross_validation module kale.evaluate.metrics module kale.evaluate.similarity_metrics module kale.evaluate.uncertainty_metrics module kale.interpret module kale.interpret.model_weights module kale.interpret.uncertainty_quantiles module kale.interpret.visualize module kale.loaddata module kale.loaddata.avmnist_datasets module kale.loaddata.dataset_access module kale.loaddata.image_access module kale.loaddata.mnistm module kale.loaddata.multi_domain module kale.loaddata.multiomics_datasets module kale.loaddata.polypharmacy_datasets module kale.loaddata.sampler module kale.loaddata.tabular_access module kale.loaddata.tdc_datasets module

kale.loaddata.usps module kale.loaddata.video_access module kale.loaddata.video_datasets module kale.loaddata.video_multi_domain module kale.loaddata.videos module kale.pipeline module kale.pipeline.base_nn_trainer module kale.pipeline.deepdta module kale.pipeline.domain_adapter module kale.pipeline.mpca_trainer module kale.pipeline.multi_domain_adapter module kale.pipeline.multiomics_trainer module kale.pipeline.video_domain_adapter module kale.predict module kale.predict.class_domain_nets module kale.predict.decode module kale.predict.isonet module kale.predict.losses module kale.predict.uncertainty_binning module kale.prepdata module kale.prepdata.chem_transform module kale.prepdata.graph_negative_sampling module kale.prepdata.image_transform module kale.prepdata.string_transform module kale.prepdata.supergraph_construct module kale.prepdata.tabular_transform module kale.prepdata.tensor_reshape module kale.prepdata.video_transform module kale.utils module kale.utils.distance module kale.utils.download module kale.utils.initialize_nn module kale.utils.logger module kale.utils.print module kale.utils.save_xlsx module kale.utils.seed module KITCHEN (kale.loaddata.video_access.VideoDataset attribute) KITCHENDatasetAccess (class in kale.loaddata.video_access)

L

leave_one_group_out() (in module kale.evaluate.cross_validation) len() (kale.loaddata.multiomics_datasets.MultiomicsDataset method) LeNet (class in kale.embed.image_cnn) LinearClassifier (class in kale.predict.decode)

load_csv_columns() (in module kale.loaddata.tabular_access) load_data() (kale.loaddata.avmnist_datasets.AVMNISTDataset method) (kale.loaddata.polypharmacy_datasets.PolypharmacyDataset method) load_samples() (kale.loaddata.usps.USPS method) LowRankTensorFusion (class in kale.embed.feature_fusion)

M

M3SDATrainer (class in kale.pipeline.multi_domain_adapter) make_dataset() (kale.loaddata.video_datasets.BasicVideoDataset method) (kale.loaddata.video_datasets.EPIC method) make_multi_domain_set() (in module kale.loaddata.multi_domain) mask_img_stack() (in module kale.prepdata.image_transform) Max (kale.loaddata.multi_domain.DatasetSizeType attribute) MaxPool3dSamePadding (class in kale.embed.video_i3d) mc3() (in module kale.embed.video_res3d) mc3_18_flow() (in module kale.embed.video_res3d) mc3_18_rgb() (in module kale.embed.video_res3d) mean_ (kale.embed.factorization.MPCA attribute) message() (kale.embed.mogonet.MogonetGCNConv method) message_and_aggregate() (kale.embed.mogonet.MogonetGCNConv method) Method (class in kale.pipeline.domain_adapter) method (kale.pipeline.domain_adapter.BaseAdaptTrainer property) MFSANTrainer (class in kale.pipeline.multi_domain_adapter) MIDA (class in kale.embed.factorization) MLPDecoder (class in kale.predict.decode) MME (kale.pipeline.domain_adapter.Method attribute) MNIST (kale.loaddata.image_access.DigitDataset attribute) MNIST_RGB (kale.loaddata.image_access.DigitDataset attribute) MNISTDatasetAccess (class in kale.loaddata.image_access) MNISTM (class in kale.loaddata.mnistm) (kale.loaddata.image_access.DigitDataset attribute) MNISTMDatasetAccess (class in kale.loaddata.image_access) module kale.embed kale.embed.attention_cnn kale.embed.factorization kale.embed.feature_fusion kale.embed.gcn kale.embed.gripnet kale.embed.image_cnn kale.embed.mogonet kale.embed.positional_encoding kale.embed.seq_nn kale.embed.uncertainty_fitting kale.embed.video_feature_extractor kale.embed.video_i3d kale.embed.video_res3d kale.embed.video_se_i3d kale.embed.video_se_res3d kale.embed.video_selayer kale.evaluate kale.evaluate.cross_validation kale.evaluate.metrics kale.evaluate.similarity_metrics kale.evaluate.uncertainty_metrics kale.interpret kale.interpret.model_weights kale.interpret.uncertainty_quantiles kale.interpret.visualize kale.loaddata kale.loaddata.avmnist_datasets kale.loaddata.dataset_access kale.loaddata.image_access kale.loaddata.mnistm kale.loaddata.multi_domain kale.loaddata.multiomics_datasets kale.loaddata.polypharmacy_datasets kale.loaddata.sampler kale.loaddata.tabular_access kale.loaddata.tdc_datasets kale.loaddata.usps kale.loaddata.video_access kale.loaddata.video_datasets kale.loaddata.video_multi_domain kale.loaddata.videos kale.pipeline kale.pipeline.base_nn_trainer kale.pipeline.deepdta kale.pipeline.domain_adapter kale.pipeline.mpca_trainer kale.pipeline.multi_domain_adapter kale.pipeline.multiomics_trainer kale.pipeline.video_domain_adapter kale.predict kale.predict.class_domain_nets kale.predict.decode kale.predict.isonet kale.predict.losses kale.predict.uncertainty_binning kale.prepdata kale.prepdata.chem_transform kale.prepdata.graph_negative_sampling kale.prepdata.image_transform kale.prepdata.string_transform kale.prepdata.supergraph_construct kale.prepdata.tabular_transform kale.prepdata.tensor_reshape kale.prepdata.video_transform kale.utils kale.utils.distance kale.utils.download kale.utils.initialize_nn kale.utils.logger kale.utils.print kale.utils.save_xlsx kale.utils.seed

MogonetGCN (class in kale.embed.mogonet) MogonetGCNConv (class in kale.embed.mogonet) MPCA (class in kale.embed.factorization) MPCATrainer (class in kale.pipeline.mpca_trainer) MultiDataLoader (class in kale.loaddata.sampler) MultiDomainAccess (class in kale.loaddata.multi_domain) MultiDomainAdapDataset (class in kale.loaddata.multi_domain) MultiDomainDatasets (class in kale.loaddata.multi_domain) MultiDomainImageFolder (class in kale.loaddata.multi_domain) MultimodalNNTrainer (class in kale.pipeline.base_nn_trainer) MultiomicsDataset (class in kale.loaddata.multiomics_datasets) MultiomicsTrainer (class in kale.pipeline.multiomics_trainer) multitask_topk_accuracy() (in module kale.predict.losses)

N

n_classes() (kale.loaddata.dataset_access.DatasetAccess method) (kale.predict.class_domain_nets.ClassNetSmallImage method) (kale.predict.class_domain_nets.ClassNetVideo method) (kale.predict.class_domain_nets.SoftmaxNet method) NATURAL (kale.loaddata.multi_domain.WeightingType attribute)

negative_sampling() (in module kale.prepdata.graph_negative_sampling) norm() (kale.embed.gcn.GCNEncoderLayer static method) normalize_img_stack() (in module kale.prepdata.image_transform) num_classes (kale.loaddata.multiomics_datasets.MultiomicsDataset property) num_modalities (kale.loaddata.multiomics_datasets.MultiomicsDataset property)

O

Office31 (class in kale.loaddata.image_access) OfficeAccess (class in kale.loaddata.image_access) OfficeCaltech (class in kale.loaddata.image_access) ortho() (kale.predict.isonet.ISONet method) ortho_conv() (kale.predict.isonet.ISONet method) out_file_core() (in module kale.utils.logger)

output_size() (kale.embed.image_cnn.ResNet101Feature method) (kale.embed.image_cnn.ResNet152Feature method) (kale.embed.image_cnn.ResNet18Feature method) (kale.embed.image_cnn.ResNet34Feature method) (kale.embed.image_cnn.ResNet50Feature method) (kale.embed.image_cnn.SmallCNNFeature method)

P

plot_cumulative() (in module kale.interpret.uncertainty_quantiles) plot_multi_images() (in module kale.interpret.visualize) plot_weights() (in module kale.interpret.visualize) PolypharmacyDataset (class in kale.loaddata.polypharmacy_datasets) PositionalEncoding (class in kale.embed.positional_encoding) pprint() (in module kale.utils.print) pprint_without_newline() (in module kale.utils.print) predict() (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method)

predict_proba() (kale.pipeline.mpca_trainer.MPCATrainer method) prepare_data_loaders() (kale.loaddata.multi_domain.DomainsDatasetBase method) (kale.loaddata.multi_domain.MultiDomainAdapDataset method) (kale.loaddata.multi_domain.MultiDomainDatasets method) (kale.loaddata.video_multi_domain.VideoMultiDomainDatasets method) PRESET0 (kale.loaddata.multi_domain.WeightingType attribute) process() (kale.loaddata.multiomics_datasets.MultiomicsDataset method) processed_file_names (kale.loaddata.multiomics_datasets.MultiomicsDataset property) processed_folder (kale.loaddata.mnistm.MNISTM attribute) proj_mats (kale.embed.factorization.MPCA attribute)

Q

quantile_binning_and_est_errors() (in module kale.interpret.uncertainty_quantiles)

quantile_binning_predictions() (in module kale.predict.uncertainty_binning)

R

r2plus1d() (in module kale.embed.video_res3d) r2plus1d_18_flow() (in module kale.embed.video_res3d) r2plus1d_18_rgb() (in module kale.embed.video_res3d) R2Plus1dFlowStem (class in kale.embed.video_res3d) R2Plus1dStem (class in kale.embed.video_res3d) r3d() (in module kale.embed.video_res3d) r3d_18_flow() (in module kale.embed.video_res3d) r3d_18_rgb() (in module kale.embed.video_res3d) raw_file_names (kale.loaddata.multiomics_datasets.MultiomicsDataset property) raw_folder (kale.loaddata.mnistm.MNISTM attribute) read_dicom_dir() (in module kale.loaddata.image_access) read_dicom_phases() (in module kale.loaddata.image_access) reg_img_stack() (in module kale.prepdata.image_transform) replace_fc() (kale.embed.video_res3d.VideoResNet method) replace_logits() (kale.embed.video_i3d.InceptionI3d method) ResBlock (class in kale.predict.isonet) rescale_img_stack() (in module kale.prepdata.image_transform)

reset() (kale.loaddata.sampler.InfiniteSliceIterator method) reset_parameters() (kale.embed.gcn.GCNEncoderLayer method) (kale.embed.gcn.RGCNEncoderLayer method) (kale.embed.mogonet.MogonetGCNConv method) (kale.predict.decode.DistMultDecoder method) (kale.predict.decode.LinearClassifier method) (kale.predict.decode.VCDN method) ResHead (class in kale.predict.isonet) ResNet101Feature (class in kale.embed.image_cnn) ResNet152Feature (class in kale.embed.image_cnn) ResNet18Feature (class in kale.embed.image_cnn) ResNet34Feature (class in kale.embed.image_cnn) ResNet50Feature (class in kale.embed.image_cnn) ResStage (class in kale.predict.isonet) ResStem (class in kale.predict.isonet) ReweightedBatchSampler (class in kale.loaddata.sampler) RGCNEncoderLayer (class in kale.embed.gcn)

S

SamplingConfig (class in kale.loaddata.sampler) save_dict_xlsx() (in module kale.utils.save_xlsx) se_i3d_joint() (in module kale.embed.video_se_i3d) se_inception_i3d() (in module kale.embed.video_se_i3d) se_mc3() (in module kale.embed.video_se_res3d) se_mc3_18_flow() (in module kale.embed.video_se_res3d) se_mc3_18_rgb() (in module kale.embed.video_se_res3d) se_r2plus1d() (in module kale.embed.video_se_res3d) se_r2plus1d_18_flow() (in module kale.embed.video_se_res3d) se_r2plus1d_18_rgb() (in module kale.embed.video_se_res3d) se_r3d() (in module kale.embed.video_se_res3d) se_r3d_18_flow() (in module kale.embed.video_se_res3d) se_r3d_18_rgb() (in module kale.embed.video_se_res3d) SEInceptionI3DFlow (class in kale.embed.video_se_i3d) SEInceptionI3DRGB (class in kale.embed.video_se_i3d) SELayer (class in kale.embed.video_selayer) SELayerC (class in kale.embed.video_selayer) SELayerCoC (class in kale.embed.video_selayer) SELayerMAC (class in kale.embed.video_selayer) SELayerMC (class in kale.embed.video_selayer) SELayerT (class in kale.embed.video_selayer) select_top_weight() (in module kale.interpret.model_weights) seq_to_spatial() (in module kale.prepdata.tensor_reshape) set_decision_function_request() (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method) set_fit_request() (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method)

set_inverse_transform_request() (kale.embed.factorization.MPCA method) set_predict_proba_request() (kale.pipeline.mpca_trainer.MPCATrainer method) set_predict_request() (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method) set_requires_grad() (in module kale.pipeline.domain_adapter) set_score_request() (kale.pipeline.mpca_trainer.MPCATrainer method) (kale.pipeline.multi_domain_adapter.CoIRLS method) set_seed() (in module kale.utils.seed) set_supergraph_para_setting() (kale.prepdata.supergraph_construct.SuperGraph method) set_transform_request() (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) shape_in (kale.embed.factorization.MPCA attribute) shape_out (kale.embed.factorization.MPCA attribute) SimpleCNNBuilder (class in kale.embed.image_cnn) SmallCNNFeature (class in kale.embed.image_cnn) SoftmaxNet (class in kale.predict.class_domain_nets) Source (kale.loaddata.multi_domain.DatasetSizeType attribute) (kale.pipeline.domain_adapter.Method attribute) SparseMultiomicsDataset (class in kale.loaddata.multiomics_datasets) spatial_to_seq() (in module kale.prepdata.tensor_reshape) split_by_ratios() (in module kale.loaddata.dataset_access) SReLU (class in kale.predict.isonet) strip_for_bound() (in module kale.prepdata.string_transform) SuperEdge (class in kale.prepdata.supergraph_construct) SuperGraph (class in kale.prepdata.supergraph_construct) SuperVertex (class in kale.prepdata.supergraph_construct) SuperVertexParaSetting (class in kale.prepdata.supergraph_construct) SVHN (kale.loaddata.image_access.DigitDataset attribute) SVHNDatasetAccess (class in kale.loaddata.image_access)

T

TensorPermute (class in kale.prepdata.video_transform) test_dataloader() (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) test_file (kale.loaddata.mnistm.MNISTM attribute) test_step() (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.deepdta.BaseDTATrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) (kale.predict.decode.GripNetLinkPrediction method) ToOneHotEncoding (class in kale.prepdata.tabular_transform) topk_accuracy() (in module kale.predict.losses) ToTensor (class in kale.prepdata.tabular_transform) tprint() (in module kale.utils.print)

train_dataloader() (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) training_file (kale.loaddata.mnistm.MNISTM attribute) training_step() (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.deepdta.BaseDTATrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainer method) (kale.pipeline.domain_adapter.WDGRLTrainerMod method) (kale.pipeline.multiomics_trainer.MultiomicsTrainer method) (kale.pipeline.video_domain_adapter.DANNTrainerVideo method) (kale.predict.decode.GripNetLinkPrediction method) transform() (kale.embed.factorization.MIDA method) (kale.embed.factorization.MPCA method) typed_negative_sampling() (in module kale.prepdata.graph_negative_sampling)

U

Unit3D (class in kale.embed.video_i3d) update() (kale.embed.mogonet.MogonetGCNConv method) url (kale.loaddata.mnistm.MNISTM attribute) (kale.loaddata.usps.USPS attribute)

USPS (class in kale.loaddata.usps) (kale.loaddata.image_access.DigitDataset attribute) USPS_RGB (kale.loaddata.image_access.DigitDataset attribute) USPSDatasetAccess (class in kale.loaddata.image_access)

V

val_dataloader() (kale.pipeline.domain_adapter.BaseAdaptTrainer method) VALID_ENDPOINTS (kale.embed.video_i3d.InceptionI3d attribute) validation_step() (kale.pipeline.base_nn_trainer.BaseNNTrainer method) (kale.pipeline.base_nn_trainer.MultimodalNNTrainer method) (kale.pipeline.deepdta.BaseDTATrainer method) (kale.pipeline.deepdta.DeepDTATrainer method) (kale.pipeline.domain_adapter.BaseAdaptTrainer method) (kale.predict.decode.GripNetLinkPrediction method)

VCDN (class in kale.predict.decode) VideoDataset (class in kale.loaddata.video_access) VideoDatasetAccess (class in kale.loaddata.video_access) VideoFrameDataset (class in kale.loaddata.videos) VideoMultiDomainDatasets (class in kale.loaddata.video_multi_domain) VideoResNet (class in kale.embed.video_res3d)

W

WDGRL (kale.pipeline.domain_adapter.Method attribute) WDGRLMod (kale.pipeline.domain_adapter.Method attribute) WDGRLTrainer (class in kale.pipeline.domain_adapter)

WDGRLTrainerMod (class in kale.pipeline.domain_adapter) WDGRLTrainerVideo (class in kale.pipeline.video_domain_adapter) WeightingType (class in kale.loaddata.multi_domain)

X

xavier_init() (in module kale.utils.initialize_nn)